STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2964KEGG: mno:Mnod_0039 crotonyl-CoA reductase; TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. (435 aa)    
Predicted Functional Partners:
Rvan_1595
PFAM: MaoC domain protein dehydratase; KEGG: azo:azo3194 hypothetical protein.
 
 0.941
Rvan_3650
TIGRFAM: methylmalonyl-CoA epimerase; KEGG: xau:Xaut_4617 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.906
Rvan_1142
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: azc:AZC_0992 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
   
 0.843
Rvan_0096
PFAM: MaoC domain protein dehydratase; KEGG: mno:Mnod_3627 MaoC domain protein dehydratase.
 
 
 0.817
Rvan_2966
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pla:Plav_1613 acyl-CoA dehydrogenase domain-containing protein.
 
   0.788
Rvan_1682
PFAM: HpcH/HpaI aldolase; KEGG: xau:Xaut_3870 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.773
Rvan_2233
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   0.764
Rvan_3415
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rhi:NGR_c37150 predicted enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   0.762
Rvan_0121
PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0943 putative propionate--CoA ligase.
 
 
  
 0.637
Rvan_2965
KEGG: mbr:MONBRDRAFT_34462 hypothetical protein.
       0.605
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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