STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2971PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (279 aa)    
Predicted Functional Partners:
Rvan_2970
TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: mmr:Mmar10_0363 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; Belongs to the KdsB family.
       0.773
Rvan_3494
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase/reductase SDR.
 
 
 0.699
Rvan_2973
KEGG: azc:AZC_2233 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
     
 0.519
Rvan_2969
PFAM: Phosphoglycerate mutase; KEGG: mmr:Mmar10_0362 phosphoglycerate mutase.
 
     0.515
Rvan_2972
PFAM: protein of unknown function DUF1345; KEGG: dar:Daro_0590 hypothetical protein.
       0.511
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
  
 0.448
Rvan_1648
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_2128 short chain dehydrogenase/reductase family oxidoreductase.
 
 
 0.416
Rvan_2309
PFAM: lipolytic protein G-D-S-L family; KEGG: rru:Rru_A3650 lipolytic protein.
  
  
 0.415
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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