STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3012KEGG: rpt:Rpal_4013 protein of unknown function DUF1321. (184 aa)    
Predicted Functional Partners:
Rvan_1647
PFAM: Protein of unknown function DUF2312; KEGG: met:M446_5200 hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.793
Rvan_0986
PFAM: protein of unknown function DUF1013; KEGG: met:M446_6075 hypothetical protein.
  
   
 0.777
Rvan_2262
PFAM: protein of unknown function DUF1058; KEGG: bbk:BARBAKC583_1266 hypothetical protein.
  
     0.754
Rvan_0220
KEGG: azl:AZL_027200 double-strand break repair protein.
  
     0.735
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: pla:Plav_0432 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.722
Rvan_0219
KEGG: atc:AGR_C_39 hypothetical protein; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.689
Rvan_0524
PFAM: Glutathione S-transferase domain; KEGG: mno:Mnod_5423 glutathione S-transferase domain protein.
  
     0.672
atpF
H+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
   
 0.672
ftsQ
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.651
Rvan_2172
PFAM: DNA polymerase III chi subunit HolC; KEGG: DNA polymerase III chi subunit HolC.
  
     0.649
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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