STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3013PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_3215 ErfK/YbiS/YcfS/YnhG family protein. (192 aa)    
Predicted Functional Partners:
Rvan_1371
KEGG: oan:Oant_2153 hypothetical protein.
  
     0.529
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
 
     0.518
Rvan_1740
PFAM: Invasion associated locus B family protein; KEGG: oca:OCAR_4683 invasion associated locus B.
  
     0.509
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.503
Rvan_3307
PFAM: Invasion associated locus B family protein; KEGG: azc:AZC_1224 hypothetical protein.
  
     0.491
Rvan_2191
PFAM: Uncharacterised protein family UPF0283; KEGG: atc:AGR_C_2505 hypothetical protein.
  
     0.490
Rvan_1672
KEGG: rpt:Rpal_2206 hypothetical protein.
  
     0.466
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.461
Rvan_2488
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: ara:Arad_0300 penicillin-insensitive murein endopeptidase.
  
     0.448
Rvan_0483
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: rle:RL0184 penicillin-insensitive murein endopeptidase.
  
     0.438
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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