STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3016Hopanoid-associated phosphorylase; KEGG: cti:RALTA_B1984 hypothetical protein; TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1. (235 aa)    
Predicted Functional Partners:
Rvan_3017
TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; KEGG: bph:Bphy_4137 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
     0.791
Rvan_2491
TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: bbt:BBta_2973 putative protein export membrane protein.
  
     0.775
Rvan_3015
KEGG: oca:OCAR_6668 hopanoid biosynthesis associated radical SAM protein HpnH; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein.
  
     0.775
Rvan_3021
KEGG: cyn:Cyan7425_4598 hopene-associated glycosyltransferase HpnB; TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2.
  
     0.765
Rvan_3018
KEGG: rpc:RPC_1719 amine oxidase; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase.
  
     0.735
Rvan_3253
PFAM: Carbohydrate-selective porin OprB; KEGG: mno:Mnod_4737 carbohydrate-selective porin OprB.
  
     0.665
Rvan_2402
PFAM: Carbohydrate-selective porin OprB; KEGG: nha:Nham_2969 carbohydrate-selective porin OprB.
  
     0.650
Rvan_3019
TIGRFAM: squalene synthase HpnD; KEGG: msl:Msil_3241 squalene synthase HpnD; PFAM: Squalene/phytoene synthase.
  
     0.563
Rvan_3020
KEGG: oca:OCAR_6674 squalene synthase HpnC; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase.
  
     0.446
Rvan_2949
KEGG: msl:Msil_2445 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.440
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.