STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3036PFAM: OmpA/MotB domain protein; KEGG: mno:Mnod_1486 OmpA/MotB domain protein. (789 aa)    
Predicted Functional Partners:
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.779
Rvan_2507
KEGG: mlo:mlr3700 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver.
 
 
 0.660
Rvan_3037
KEGG: lmy:LM5923_0618 hypothetical protein.
       0.594
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
 
   
 0.494
Rvan_2191
PFAM: Uncharacterised protein family UPF0283; KEGG: atc:AGR_C_2505 hypothetical protein.
  
     0.491
Rvan_0786
KEGG: rlt:Rleg2_1411 periplasmic protein-like protein.
  
    0.483
Rvan_2512
KEGG: smd:Smed_5952 signal transduction histidine kinase; PFAM: response regulator receiver; histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein.
  
  
 0.479
Rvan_0723
KEGG: mrd:Mrad2831_2937 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
  
 
   0.466
Rvan_2300
SMART: response regulator receiver; KEGG: ccs:CCNA_03154 PAS-family sensor histidine kinase/receiver protein.
  
 
   0.466
Rvan_2199
PFAM: CsbD family protein; KEGG: azl:AZL_012380 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.465
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.