STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3057PFAM: ABC-3 protein; KEGG: tgr:Tgr7_2749 ABC-3 protein. (265 aa)    
Predicted Functional Partners:
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 0.999
Rvan_2197
PFAM: periplasmic solute binding protein; KEGG: ara:Arad_2765 zinc uptake ABC transporter.
 
 
 0.986
Rvan_3055
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0489 ferric uptake regulator family protein; Belongs to the Fur family.
 
  
 0.917
mntH
Mn2+/Fe2+ transporter, NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
  
 0.694
Rvan_0468
KEGG: mno:Mnod_3626 iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; SMART: iron dependent repressor.
  
  
 0.611
Rvan_0576
KEGG: rde:RD1_1739 hypothetical protein.
  
  
 0.569
ispG
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.527
Rvan_0047
KEGG: rpe:RPE_1968 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein.
    
 0.450
Rvan_1286
KEGG: bra:BRADO0114 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.444
fur-2
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sme:SMc00329 putative iron response regulator protein; Belongs to the Fur family.
 
  
 0.439
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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