STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3087PFAM: amidinotransferase; KEGG: gbe:GbCGDNIH1_1191 amidinotransferase family protein. (293 aa)    
Predicted Functional Partners:
Rvan_3088
KEGG: gbe:GbCGDNIH1_1948 ornithine--oxo-acid transaminase; TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.979
Rvan_3086
KEGG: gau:GAU_3905 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type.
     
 0.595
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: mno:Mnod_7457 acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
  
 0.565
Rvan_2246
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azl:AZL_024080 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
   
    0.483
Rvan_1681
PFAM: glycosyl transferase family 8; KEGG: bln:Blon_2385 glycosyl transferase, family 8.
   
    0.468
Rvan_0533
KEGG: ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN.
   
    0.467
Rvan_1604
PFAM: sodium/calcium exchanger membrane region; KEGG: bja:bll7121 putative ionic transporter.
   
    0.465
Rvan_2489
PFAM: aminotransferase class-III; KEGG: bid:Bind_3215 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.427
Rvan_1200
KEGG: sma:SAV_264 hypothetical protein.
  
     0.418
Rvan_1005
PFAM: TspO/MBR family protein; KEGG: mpt:Mpe_A2778 tryptophan-rich sensory protein.
   
    0.412
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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