STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3113KEGG: rce:RC1_4022 hypothetical protein. (371 aa)    
Predicted Functional Partners:
Rvan_3112
PFAM: glycosyl transferase group 1; KEGG: mrb:Mrub_0354 glycosyl transferase group 1.
 
    0.840
Rvan_3109
Manually curated; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: tmz:Tmz1t_3247 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II.
 
     0.817
Rvan_3110
Hypothetical protein; KEGG: abu:Abu_0682 O-antigen translocase.
  
    0.796
Rvan_3111
TIGRFAM: methyltransferase FkbM family; KEGG: met:M446_1079 FkbM family methyltransferase.
  
    0.795
Rvan_3115
PFAM: glycosyl transferase group 1; KEGG: acp:A2cp1_3254 glycosyl transferase group 1.
 
    0.780
Rvan_3114
KEGG: sli:Slin_4075 hypothetical protein.
       0.696
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
       0.416
Rvan_3108
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: xau:Xaut_1019 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
       0.416
Rvan_2148
KEGG: cak:Caul_0228 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; glycoside hydrolase family 18; glycosyl transferase family 2; SMART: chitinase II.
 
  
 0.408
Rvan_1681
PFAM: glycosyl transferase family 8; KEGG: bln:Blon_2385 glycosyl transferase, family 8.
  
  
 0.401
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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