STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3124PFAM: integrase family protein; KEGG: rsp:RSP_2749 P4 family integrase; Belongs to the 'phage' integrase family. (422 aa)    
Predicted Functional Partners:
Rvan_3125
PFAM: Prophage CP4-57 regulatory; KEGG: nmu:Nmul_A2182 phage transcriptional regulator, AlpA.
 
  
 0.780
Rvan_1051
PFAM: protein of unknown function DUF927; KEGG: esa:ESA_03018 hypothetical protein.
 
  
 0.586
Rvan_2789
PFAM: protein of unknown function DUF927; KEGG: zinc-binding domain of primase-helicase family protein.
 
  
 0.585
Rvan_3123
KEGG: bte:BTH_I0391 hypothetical protein.
       0.526
Rvan_2484
PFAM: protein of unknown function DUF927; KEGG: lpf:lpl1073 hypothetical protein.
 
  
 0.444
Rvan_3122
KEGG: bpm:BURPS1710b_0631 hypothetical protein.
       0.427
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.