STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3141PFAM: EcoEI R domain protein; type III restriction protein res subunit; protein of unknown function DUF450; KEGG: hsdR3; type I restriction-modification system RcaSBIV subunit R; SMART: DEAD-like helicase. (775 aa)    
Predicted Functional Partners:
Rvan_3143
PFAM: N-6 DNA methylase; KEGG: hsdM3; type I restriction-modification system RcaSBIV subunit M.
 
 
 0.981
Rvan_3142
PFAM: restriction modification system DNA specificity domain; KEGG: ava:Ava_3267 restriction modification system DNA specificity subunit.
 
 
 0.976
Rvan_1907
PFAM: N-6 DNA methylase; KEGG: sme:SMc02296 putative modification enzyme transmembrane protein.
 
 
 0.782
Rvan_1906
PFAM: restriction modification system DNA specificity domain; KEGG: cli:Clim_2467 restriction modification system DNA specificity domain.
 
 
 0.714
Rvan_2833
Restriction modification system DNA specificity domain protein; KEGG: ana:all2687 type I restriction-modification enzyme S subunit; manually curated; PFAM: restriction modification system DNA specificity domain.
 
 
 0.712
Rvan_2836
KEGG: bid:Bind_2672 N-6 DNA methylase; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase.
  
 
 0.700
Rvan_1419
PFAM: N-6 DNA methylase; KEGG: rme:Rmet_6243 hypothetical protein.
  
 
 0.661
Rvan_3169
PFAM: restriction endonuclease; KEGG: azl:AZL_027010 restriction system protein.
  
  
 0.593
Rvan_0263
KEGG: mrd:Mrad2831_4673 putative DNA helicase.
  
    0.517
Rvan_3140
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: azl:AZL_013840 DNA-invertase.
     
 0.500
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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