Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3169PFAM: restriction endonuclease; KEGG: azl:AZL_027010 restriction system protein. (310 aa)    
Predicted Functional Partners:
Rvan_0590
KEGG: aeh:Mlg_1663 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
   
    0.803
Rvan_3141
PFAM: EcoEI R domain protein; type III restriction protein res subunit; protein of unknown function DUF450; KEGG: hsdR3; type I restriction-modification system RcaSBIV subunit R; SMART: DEAD-like helicase.
  
  
 0.605
Rvan_3168
KEGG: nha:Nham_4025 hypothetical protein.
       0.539
Rvan_1907
PFAM: N-6 DNA methylase; KEGG: sme:SMc02296 putative modification enzyme transmembrane protein.
 
  
 0.499
Rvan_2836
KEGG: bid:Bind_2672 N-6 DNA methylase; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase.
  
  
 0.431
Rvan_3143
PFAM: N-6 DNA methylase; KEGG: hsdM3; type I restriction-modification system RcaSBIV subunit M.
  
  
 0.431
Rvan_1419
PFAM: N-6 DNA methylase; KEGG: rme:Rmet_6243 hypothetical protein.
  
  
 0.406
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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