STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3183KEGG: nar:Saro_0765 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Rvan_3184
KEGG: nar:Saro_0764 hypothetical protein.
  
 
 0.983
Rvan_2458
KEGG: met:M446_3171 hypothetical protein.
   
  
 0.575
Rvan_3182
KEGG: nar:Saro_0767 hypothetical protein.
       0.552
Rvan_3181
KEGG: nar:Saro_0766 hypothetical protein.
       0.539
Rvan_3323
KEGG: rsq:Rsph17025_3714 hypothetical protein.
   
    0.483
Rvan_3185
KEGG: rce:RC1_0162 hypothetical protein.
       0.477
Rvan_3186
KEGG: osa:4345121 hypothetical protein.
       0.434
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.