STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3239PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: met:M446_1761 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Rvan_3241
PFAM: FAD linked oxidase domain protein; KEGG: mno:Mnod_4582 FAD linked oxidase domain protein.
 
 0.998
Rvan_3240
PFAM: FAD linked oxidase domain protein; KEGG: mrd:Mrad2831_4651 FAD linked oxidase domain-containing protein.
 
 
 0.996
Rvan_1914
TIGRFAM: malate synthase A; KEGG: pzu:PHZ_c3212 malate synthase; PFAM: Malate synthase family protein; Belongs to the malate synthase family.
  
 
 0.924
Rvan_1617
KEGG: xau:Xaut_4762 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
    
 0.903
Rvan_2136
KEGG: cak:Caul_3547 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
    
 0.903
Rvan_2261
KEGG: xau:Xaut_4126 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region.
    
 0.903
Rvan_2437
KEGG: mno:Mnod_1296 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.
    
 0.903
Rvan_3108
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: xau:Xaut_1019 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
     
 0.903
Rvan_1682
PFAM: HpcH/HpaI aldolase; KEGG: xau:Xaut_3870 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
     
  0.900
Rvan_0748
KEGG: mes:Meso_0368 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162.
 
 
 0.812
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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