STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3259PFAM: Peptidase M23; KEGG: nha:Nham_0524 peptidase M23B. (462 aa)    
Predicted Functional Partners:
Rvan_3386
KEGG: bja:blr1391 cell division protein.
 
 
 
 0.958
Rvan_3260
TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: rpb:RPB_0258 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
 
    0.901
Rvan_3424
PFAM: peptidase M48 Ste24p; KEGG: bra:BRADO3508 hypothetical protein.
 
 
 
 0.721
Rvan_2467
Radical SAM domain protein; KEGG: gdi:GDI_2405 hypothetical protein; PFAM: Radical SAM domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
 
 
 
 0.712
Rvan_3065
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
 
  
 0.672
Rvan_1163
Putative adenylate/guanylate cyclase; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: rhi:NGR_b01410 probable adenylate class-3/4/guanylyl cyclase; SMART: Tetratricopeptide repeat.
   
 
 0.665
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.641
Rvan_0903
TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: azc:AZC_4133 peptidase S41A protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
 
    0.575
Rvan_0538
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: bid:Bind_0857 TPR repeat-containing protein.
 
  
 0.563
Rvan_1603
KEGG: nwi:Nwi_2596 phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily.
   
   0.542
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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