Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3316KEGG: swi:Swit_4443 hypothetical protein. (654 aa)    
Predicted Functional Partners:
Rvan_3318
Hypothetical protein; Manually curated; KEGG: swi:Swit_4452 hypothetical protein.
   
   0.901
Rvan_3317
Hypothetical protein; KEGG: shm:Shewmr7_3847 signal recognition particle-docking protein FtsY.
       0.678
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.608
Rvan_3315
KEGG: xau:Xaut_3704 hypothetical protein.
       0.565
Rvan_3319
Hypothetical protein; KEGG: bta:539323 dachsous 2 (Drosophila).
       0.508
Rvan_3320
KEGG: rsq:Rsph17025_3567 hypothetical protein.
       0.508
Rvan_3321
KEGG: mmr:Mmar10_0798 hypothetical protein.
       0.508
Rvan_3322
KEGG: gdj:Gdia_2453 hypothetical protein.
       0.419
Rvan_3325
KEGG: gdj:Gdia_2448 hypothetical protein.
       0.410
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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