STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Rvan_3333Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (248 aa)    
Predicted Functional Partners:
Rvan_3331
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
 
 0.999
Rvan_1311
KEGG: rpt:Rpal_3836 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20.
 
 0.997
Rvan_3332
PFAM: glycoside hydrolase 15-related; KEGG: mes:Meso_1528 glycoside hydrolase 15-related.
   
 0.976
Rvan_1729
KEGG: aminoglycoside phosphotransferase.
   
    0.924
Rvan_3330
Glucokinase; KEGG: mno:Mnod_5260 glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.839
Rvan_1285
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.799
Rvan_2830
SMART: AAA ATPase; KEGG: rru:Rru_A3262 hypothetical protein.
   
    0.799
Rvan_1210
PFAM: glycoside hydrolase 15-related; KEGG: putative glucoamylase or related glycosyl hydrolase protein.
   
 0.756
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.673
Rvan_1133
TIGRFAM: glycogen debranching enzyme GlgX; 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
   
 0.583
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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