STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3349KEGG: rpe:RPE_1322 3-beta hydroxysteroid dehydrogenase/isomerase. (210 aa)    
Predicted Functional Partners:
Rvan_1056
KEGG: ade:Adeh_3216 NAD-dependent epimerase/dehydratase.
 
    0.713
Rvan_1265
KEGG: gvi:glr2490 hypothetical protein.
   
    0.692
Rvan_2246
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azl:AZL_024080 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
  
    0.597
Rvan_0718
KEGG: dac:Daci_2540 hypothetical protein.
   
    0.588
Rvan_1491
KEGG: eel:EUBELI_01789 putative ATP-dependent endonuclease of the OLD family.
   
    0.588
Rvan_1437
KEGG: psp:PSPPH_0610 hypothetical protein.
   
    0.586
Rvan_2642
PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: rfr:Rfer_2478 thiamine pyrophosphate enzyme-like TPP binding protein; Belongs to the TPP enzyme family.
  
    0.563
Rvan_2199
PFAM: CsbD family protein; KEGG: azl:AZL_012380 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.526
Rvan_3392
PFAM: CsbD family protein; KEGG: noc:Noc_0274 CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
   
    0.526
Rvan_3348
PFAM: protein of unknown function DUF6 transmembrane; KEGG: azc:AZC_4595 hypothetical protein.
       0.500
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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