Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3349KEGG: rpe:RPE_1322 3-beta hydroxysteroid dehydrogenase/isomerase. (210 aa)    
Predicted Functional Partners:
Rvan_1056
KEGG: ade:Adeh_3216 NAD-dependent epimerase/dehydratase.
 
    0.581
Rvan_3348
PFAM: protein of unknown function DUF6 transmembrane; KEGG: azc:AZC_4595 hypothetical protein.
       0.499
Rvan_2533
KEGG: msl:Msil_0025 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.461
Rvan_2642
PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: rfr:Rfer_2478 thiamine pyrophosphate enzyme-like TPP binding protein; Belongs to the TPP enzyme family.
  
    0.401
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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