STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3358KEGG: rpe:RPE_3879 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Rvan_3359
KEGG: rpe:RPE_3880 hypothetical protein; TIGRFAM: Fe-only nitrogenase accessory protein AnfO; PFAM: Nitrogenase iron-iron accessory protein AnfO.
 
   
 0.942
Rvan_3362
TIGRFAM: nitrogenase iron-iron protein, alpha chain; nitrogenase alpha chain; nitrogenase component I, alpha chain; KEGG: cts:Ctha_1831 nitrogenase alpha chain; PFAM: oxidoreductase/nitrogenase component 1.
 
     0.777
Rvan_3360
KEGG: rpe:RPE_3881 nitrogenase; TIGRFAM: Fe-only nitrogenase, beta subunit; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
     0.751
Rvan_3590
PFAM: oxidoreductase/nitrogenase component 1; KEGG: rpt:Rpal_2908 nitrogenase.
  
     0.540
Rvan_3591
PFAM: oxidoreductase/nitrogenase component 1; KEGG: rpa:RPA2637 nitrogenase iron-molybdenum protein subunit NifK-like protein.
  
     0.519
Rvan_1260
KEGG: ret:RHE_PE00131 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
  
     0.472
Rvan_3361
TIGRFAM: Fe-only nitrogenase, delta subunit; KEGG: rsk:RSKD131_3890 nitrogenase iron-iron protein delta chain; PFAM: Vanadium/alternative nitrogenase delta subunit.
       0.472
Rvan_0516
Nitrogenase; KEGG: rpa:RPA1380 nitrogenase vanadium-iron protein, VnfK subunit; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
     0.440
Rvan_2494
PFAM: TROVE domain-containing protein; KEGG: mrd:Mrad2831_1806 TROVE domain-containing protein.
  
     0.436
Rvan_0514
KEGG: rpa:RPA1378 nitrogenase vanadium-iron protein alpha chain; TIGRFAM: nitrogenase vanadium-iron protein, alpha chain; nitrogenase alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
     0.423
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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