STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3375PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_1522 putative glycosyltransferase. (402 aa)    
Predicted Functional Partners:
Rvan_0425
PFAM: glycosyl transferase group 1; KEGG: family 2 glycosyl transferase.
  
     0.720
Rvan_2767
PFAM: sugar transferase; KEGG: gwc:GWCH70_3256 undecaprenyl-phosphate galactose phosphotransferase.
  
 0.706
Rvan_0398
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
  
 0.696
Rvan_0435
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
  
 0.696
Rvan_0415
PFAM: glycosyl transferase group 1; KEGG: tel:tlr0242 putative glycosyltransferase.
  
     0.626
Rvan_0840
KEGG: pla:Plav_1925 sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
 0.597
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.583
Rvan_0418
PFAM: polysaccharide biosynthesis protein; KEGG: tel:tlr1345 hypothetical protein.
 
  
 0.468
Rvan_0408
KEGG: abo:ABO_0921 hypothetical protein.
  
     0.449
Rvan_2278
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: mmr:Mmar10_2489 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
  
  
 0.449
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.