Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3386KEGG: bja:blr1391 cell division protein. (325 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 0.998
Rvan_3387
PFAM: protein of unknown function DUF218; KEGG: rpb:RPB_0836 hypothetical protein.
     0.938
Rvan_3259
PFAM: Peptidase M23; KEGG: nha:Nham_0524 peptidase M23B.
 
 
 
 0.906
Rvan_2610
PFAM: NLP/P60 protein; KEGG: mdi:METDI0995 hypothetical protein.
 
 
 
 0.809
Rvan_2665
KEGG: bbt:BBta_1811 hypothetical protein.
   
 
 0.749
Rvan_0925
PFAM: Protein of unknown function DUF2328; KEGG: mrd:Mrad2831_4036 hypothetical protein.
  
     0.724
Rvan_1305
KEGG: msl:Msil_0656 SmpA/OmlA domain protein; manually curated; PFAM: SmpA/OmlA domain-containing protein.
  
     0.704
Rvan_1687
PFAM: Sporulation domain-containing protein; KEGG: azc:AZC_2805 hypothetical protein.
  
   
 0.681
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.672
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.657
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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