STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3393PFAM: PRC-barrel domain protein; KEGG: atc:AGR_C_723 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Rvan_1985
PFAM: PRC-barrel domain protein; KEGG: ret:RHE_CH00851 hypothetical protein.
 
     0.774
Rvan_2101
PFAM: PRC-barrel domain protein; KEGG: azc:AZC_2760 hypothetical protein.
 
     0.763
Rvan_0795
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rpd:RPD_4196 hypothetical protein.
 
      0.714
Rvan_3392
PFAM: CsbD family protein; KEGG: noc:Noc_0274 CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
 
     0.687
Rvan_3203
Porin; KEGG: xau:Xaut_2468 porin.
  
     0.404
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.