STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3402Hypothetical protein; KEGG: mlo:mll0896 septum site-determining protein. (409 aa)    
Predicted Functional Partners:
Rvan_3404
PFAM: type II and III secretion system protein; transport-associated; KEGG: mno:Mnod_2567 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.946
Rvan_2612
PFAM: peptidase A24A prepilin type IV; KEGG: rpd:RPD_3518 peptidase A24A, prepilin type IV.
 
  
 0.841
Rvan_1765
P-type conjugative transfer ATPase TrbB; KEGG: net:Neut_2555 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.
 
  
 0.838
Rvan_2805
P-type conjugative transfer ATPase TrbB; KEGG: net:Neut_2555 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.
 
  
 0.836
Rvan_1077
P-type conjugative transfer ATPase TrbB; KEGG: net:Neut_2555 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.
 
  
 0.832
Rvan_2613
PFAM: Flp/Fap pilin component; KEGG: bja:bsl4812 fimbriae associated protein.
  
  
 0.779
Rvan_3401
PFAM: Integrase catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region.
       0.620
fbp
PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: inositol phosphatase/fructose-16-bisphosphatase; Belongs to the FBPase class 1 family.
   
    0.481
Rvan_0538
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: bid:Bind_0857 TPR repeat-containing protein.
  
  
 0.476
Rvan_1744
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s); SMART: EAL domain protein; GGDEF domain containing protein.
   
    0.474
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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