STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3407PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA5126 short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (254 aa)    
Predicted Functional Partners:
Rvan_3408
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: tmz:Tmz1t_0732 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.829
Rvan_3415
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rhi:NGR_c37150 predicted enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.701
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
  
   0.678
Rvan_3409
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: azo:azo0394 acyl-CoA dehydrogenase.
 
  0.664
Rvan_2900
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rce:RC1_0550 oxidoreductase, short chain dehydrogenase.
 
     0.658
Rvan_0849
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: dar:Daro_1547 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.653
Rvan_2233
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mlo:mll5584 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.609
Rvan_3604
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpt:Rpal_2559 enoyl-CoA hydratase.
   
  0.598
Rvan_3560
PFAM: sulfatase; KEGG: ava:Ava_0111 sulfatase.
   
 
 0.584
Rvan_0023
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: azl:AZL_023130 acetyl-CoA C-acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.559
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.