STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3418PFAM: Protein of unknown function DUF2155; KEGG: mch:Mchl_1229 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Rvan_1854
PFAM: protein of unknown function DUF1790; KEGG: met:M446_0854 hypothetical protein.
  
     0.707
Rvan_1371
KEGG: oan:Oant_2153 hypothetical protein.
  
     0.702
Rvan_0301
KEGG: mes:Meso_3068 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
     0.696
Rvan_3624
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: pla:Plav_3297 NADH:ubiquinone oxidoreductase 17.2 kD subunit.
 
     0.653
Rvan_2210
PFAM: HemY domain protein; KEGG: HemY domain protein.
  
     0.652
Rvan_1305
KEGG: msl:Msil_0656 SmpA/OmlA domain protein; manually curated; PFAM: SmpA/OmlA domain-containing protein.
  
     0.646
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
  
     0.643
Rvan_1740
PFAM: Invasion associated locus B family protein; KEGG: oca:OCAR_4683 invasion associated locus B.
  
     0.612
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.607
Rvan_3195
PFAM: protein of unknown function DUF1465; KEGG: mch:Mchl_2633 protein of unknown function DUF1465.
  
     0.586
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.