Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3440PFAM: LRV FeS4 cluster domain protein; KEGG: bbt:BBta_5900 hypothetical protein. (278 aa)    
Predicted Functional Partners:
Rvan_3439
PFAM: NifZ family protein; KEGG: azc:AZC_3419 iron-sulfur cofactor synthesis protein.
 
    0.960
Rvan_3441
Hypothetical protein; KEGG: rpt:Rpal_5108 tetratricopeptide TPR_2 repeat protein.
 
     0.958
Rvan_3438
PFAM: NifZ family protein; KEGG: msl:Msil_3640 NifZ family protein.
 
     0.957
Rvan_3437
Nitrogen fixation protein FixT; KEGG: rpe:RPE_4535 NifT/FixU family protein; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein.
 
    0.933
Rvan_3436
KEGG: rpc:RPC_4465 hypothetical protein.
 
     0.930
Rvan_3434
KEGG: msl:Msil_3634 hypothetical protein.
 
    0.902
Rvan_3444
KEGG: mca:MCA0204 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein.
 
    0.898
Rvan_3442
KEGG: bbt:BBta_5902 putative iron-sulfur cluster assembly protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
    0.883
Rvan_3443
KEGG: rpd:RPD_1064 4Fe-4S ferredoxin, iron-sulfur binding.
 
    0.840
Rvan_1960
PFAM: protein of unknown function DUF683; KEGG: xau:Xaut_0095 hypothetical protein.
 
    0.839
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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