STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3447PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: rfr:Rfer_2815 carbamoyl-phosphate synthase L chain, ATP-binding. (663 aa)    
Predicted Functional Partners:
Rvan_0552
KEGG: rfr:Rfer_2818 propionyl-CoA carboxylase; PFAM: carboxyl transferase.
 0.998
Rvan_0701
KEGG: nha:Nham_2125 propionyl-CoA carboxylase; PFAM: carboxyl transferase.
 0.980
Rvan_1148
PFAM: carboxyl transferase; KEGG: carboxyl transferase.
 
 0.978
Rvan_3421
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.967
Rvan_3071
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_2816 enoyl-CoA hydratase/isomerase.
 
 0.932
Rvan_3070
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rfr:Rfer_2817 acyl-CoA dehydrogenase-like.
  
 0.920
Rvan_0134
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: met:M446_2133 UreA amidolyase related protein; SMART: Allophanate hydrolase subunit 2.
 
  
 0.912
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
 
 0.855
Rvan_3648
KEGG: pla:Plav_3212 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein.
 
  
 0.851
Rvan_3445
PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce8696 putative long-chain fatty-acid--CoA ligase.
  
  
 0.801
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.