STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3449PFAM: amino acid permease-associated region; KEGG: bja:bll5532 hypothetical protein. (459 aa)    
Predicted Functional Partners:
Rvan_3448
Hypothetical protein; KEGG: bra:BRADO2978 putative signal peptide.
      0.857
Rvan_2855
Hypothetical protein; KEGG: ana:all0192 serine/threonine kinase.
    
 0.557
Rvan_3450
KEGG: bja:blr5533 hypothetical protein.
       0.517
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.465
dctA
Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
 
 0.464
Rvan_0961
Hypothetical protein; KEGG: cli:Clim_2385 OmpA/MotB domain protein.
  
     0.462
Rvan_3445
PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce8696 putative long-chain fatty-acid--CoA ligase.
  
 
 0.439
Rvan_2082
PFAM: amino acid permease-associated region; KEGG: bur:Bcep18194_C7711 amino acid permease-associated region.
  
     0.433
Rvan_3447
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: rfr:Rfer_2815 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.416
Rvan_3072
PFAM: peptidase M24; creatinase; KEGG: mno:Mnod_4443 peptidase M24.
 
  
 0.413
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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