STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3458PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: oan:Oant_3124 ATPase BadF/BadG/BcrA/BcrD type. (293 aa)    
Predicted Functional Partners:
Rvan_3460
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: mpo:Mpop_4842 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
 
  
 0.995
Rvan_3459
Glutamine--fructose-6-phosphate transaminase (isomerizing); KEGG: ccs:CCNA_00453 glucosamine-6-phosphate deaminase; PFAM: sugar isomerase (SIS).
 
  
 0.991
Rvan_3457
PFAM: sugar isomerase (SIS); KEGG: sugar isomerase (SIS).
  
 0.940
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.934
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
   
 
 0.911
Rvan_0670
KEGG: mch:Mchl_1972 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2.
  
    0.550
Rvan_1722
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: met:M446_4541 mandelate racemase/muconate lactonizing protein.
  
    0.417
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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