STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3472PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bid:Bind_2970 TonB-dependent receptor. (796 aa)    
Predicted Functional Partners:
Rvan_0492
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
  
 0.728
Rvan_2519
TIGRFAM: TonB family protein; KEGG: nwi:Nwi_2038 TonB like protein.
 
 
 0.728
Rvan_1552
TIGRFAM: TonB family protein; KEGG: nha:Nham_3641 TonB-like.
 
 
 0.695
Rvan_0496
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
  
 0.684
Rvan_3481
KEGG: bid:Bind_2034 ModE family transcriptional regulator; TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain-containing protein; regulatory protein LysR.
 
     0.642
Rvan_1535
TIGRFAM: TonB family protein; KEGG: met:M446_0507 TonB family protein.
  
 
 0.617
Rvan_3302
KEGG: putative TolA.
  
 
 0.617
Rvan_0767
KEGG: met:M446_6293 hypothetical protein.
  
     0.590
Rvan_3562
TIGRFAM: TonB family protein; KEGG: bid:Bind_0529 TonB family protein.
 
 
 0.585
Rvan_3607
TIGRFAM: TonB family protein; KEGG: bid:Bind_0529 TonB family protein.
 
 
 0.585
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.