Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3486PFAM: protein of unknown function DUF583; KEGG: rsq:Rsph17025_1854 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Rvan_0621
KEGG: azl:AZL_009640 thiamine-phosphate pyrophosphorylase.
  
     0.656
Rvan_0872
PFAM: phosphopantetheine-binding; KEGG: rru:Rru_A0044 acyl carrier protein.
  
     0.547
Rvan_1306
KEGG: pla:Plav_3330 hypothetical protein.
  
     0.535
Rvan_0547
PFAM: Uncharacterised conserved protein UCP032146; KEGG: rhi:NGR_c02250 hypothetical protein; Belongs to the UPF0262 family.
  
     0.472
Rvan_0781
KEGG: pla:Plav_0739 hypothetical protein.
  
     0.460
Rvan_1707
PFAM: GcrA cell cycle regulator; KEGG: ret:RHE_CH00515 hypothetical protein.
  
     0.460
Rvan_1683
KEGG: rpt:Rpal_2944 hemimethylated DNA binding protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.
  
     0.457
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.446
Rvan_2321
PFAM: protein of unknown function DUF330; KEGG: mrd:Mrad2831_1955 hypothetical protein.
   
    0.428
Rvan_0227
PFAM: dihydroneopterin aldolase; KEGG: bid:Bind_3577 dihydroneopterin aldolase.
 
     0.422
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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