STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3499KEGG: oca:OCAR_4669 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (157 aa)    
Predicted Functional Partners:
Rvan_3497
KEGG: gbe:GbCGDNIH1_0245 hypothetical protein.
       0.545
Rvan_3498
PFAM: YCII-related; KEGG: kpn:KPN_03306 hypothetical protein.
       0.545
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: mdi:METDI0599 flagellar hook-basal body complex protein FliE.
    
   0.435
Rvan_2536
PFAM: surface presentation of antigens (SPOA) protein; KEGG: azc:AZC_0641 FliN protein.
    
   0.435
Rvan_2557
PFAM: flagellar hook capping protein; KEGG: bid:Bind_3552 flagellar basal body rod modification protein.
    
   0.435
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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