Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3510Protein of unknown function DUF1052; KEGG: pzu:PHZ_c0224 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1052. (159 aa)    
Predicted Functional Partners:
Rvan_0173
KEGG: bja:blr1149 hypothetical protein.
  
     0.686
Rvan_2361
PFAM: Uncharacterised conserved protein UCP032025; KEGG: pde:Pden_1779 hypothetical protein.
  
     0.639
rpmJ
KEGG: bid:Bind_0085 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
     0.617
Rvan_2420
Hypothetical protein; KEGG: pzu:PHZ_c3267 nucleotidyltransferase/DNA polymerase involved in DNA repair.
  
     0.601
Rvan_3508
Methyltransferase; KEGG: pzu:PHZ_c1906 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260.
       0.549
Rvan_3509
PFAM: protein of unknown function DUF323; KEGG: msl:Msil_3038 protein of unknown function DUF323.
       0.549
Rvan_3507
KEGG: amu:Amuc_1892 hypothetical protein.
       0.478
Rvan_2313
KEGG: azc:AZC_4463 hypothetical protein.
  
     0.473
Rvan_0540
Hypothetical protein; Manually curated; KEGG: oan:Oant_4041 hypothetical protein.
  
     0.459
Rvan_0444
PFAM: protein of unknown function DUF1476; KEGG: bbt:BBta_5410 hypothetical protein.
  
     0.442
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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