STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3515PFAM: protein of unknown function DUF55; KEGG: pla:Plav_1341 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Rvan_3514
PFAM: protein of unknown function DUF1223; KEGG: bbt:BBta_0383 hypothetical protein.
       0.773
Rvan_1737
PFAM: protein of unknown function DUF344; KEGG: azl:AZL_c02830 hypothetical protein.
   
    0.469
Rvan_2235
KEGG: sus:Acid_5771 hypothetical protein.
   
  
 0.466
Rvan_0727
KEGG: bra:BRADO1653 4-vinyl protochlorophyllide reductase; TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR.
   
    0.456
Rvan_1665
PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 HspC2 heat shock protein; Belongs to the small heat shock protein (HSP20) family.
   
    0.420
Rvan_2707
KEGG: swi:Swit_1147 molecular chaperone (small heat shock protein)-like protein; Belongs to the small heat shock protein (HSP20) family.
   
    0.420
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.420
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.