STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3538KEGG: mpo:Mpop_4997 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight. (157 aa)    
Predicted Functional Partners:
Rvan_0469
KEGG: protein-tyrosine-phosphatase; PFAM: PHP domain protein.
     
 0.905
Rvan_3539
PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: msl:Msil_2312 aminoglycoside phosphotransferase.
 
     0.884
Rvan_2970
TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: mmr:Mmar10_0363 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; Belongs to the KdsB family.
      0.826
Rvan_0389
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 
 0.646
Rvan_2763
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 
 0.646
Rvan_2242
PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rce:RC1_2026 deoxyribodipyrimidine photolyase family protein.
 
  
   0.623
Rvan_1617
KEGG: xau:Xaut_4762 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
      0.603
hisS
TIGRFAM: histidyl-tRNA synthetase; KEGG: mes:Meso_0422 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
      0.602
Rvan_3530
KEGG: oca:OCAR_4230 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
  
  
 0.541
Rvan_1011
HflC protein; HflC and HflK could regulate a protease.
  
    0.536
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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