Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rvan_3544Manually curated; PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: msl:Msil_3072 protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight. (166 aa)    
Predicted Functional Partners:
Rvan_0547
PFAM: Uncharacterised conserved protein UCP032146; KEGG: rhi:NGR_c02250 hypothetical protein; Belongs to the UPF0262 family.
     0.779
Rvan_3532
KEGG: xau:Xaut_0875 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
  
     0.759
Rvan_3530
KEGG: oca:OCAR_4230 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
  
  
 0.560
Rvan_3545
Hypothetical protein; KEGG: phenylalanyl-tRNA synthetase, beta subunit.
       0.485
Rvan_0356
Thioredoxin; KEGG: bid:Bind_2176 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; Belongs to the thioredoxin family.
  
 
 0.480
Rvan_0644
Thioredoxin; KEGG: azc:AZC_4257 thioredoxin precursor; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein.
  
 
 0.480
Rvan_0389
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 
 0.470
Rvan_2763
TIGRFAM: capsular exopolysaccharide family; KEGG: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
 
 0.470
Rvan_3531
TIGRFAM: arsenate reductase; KEGG: mes:Meso_4201 arsenate reductase; PFAM: arsenate reductase and related.
  
  
 0.467
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.462
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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