STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3554PFAM: Radical SAM domain protein; KEGG: rpe:RPE_3191 radical SAM domain-containing protein. (406 aa)    
Predicted Functional Partners:
Rvan_3557
PFAM: oxidoreductase/nitrogenase component 1; KEGG: rpe:RPE_3189 oxidoreductase/nitrogenase, component 1.
 
     0.861
Rvan_3558
PFAM: oxidoreductase/nitrogenase component 1; KEGG: rpt:Rpal_2888 oxidoreductase/nitrogenase component 1.
 
     0.790
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.755
Rvan_3550
KEGG: bbt:BBta_4844 putative ABC transporter (substrate-binding protein).
 
     0.728
Rvan_3556
Nitrogenase; KEGG: rsq:Rsph17025_0774 nitrogenase; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.
 
     0.725
Rvan_3555
PFAM: major facilitator superfamily MFS_1; KEGG: rci:RCIX725 major facilitator superfamily permease.
       0.671
Rvan_3551
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_0750 binding-protein-dependent transport systems inner membrane component.
       0.670
Rvan_3552
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_0749 binding-protein-dependent transport systems inner membrane component.
       0.670
Rvan_3553
KEGG: rsq:Rsph17025_0748 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.670
Rvan_3559
KEGG: xau:Xaut_3410 TPR repeat-containing protein; TIGRFAM: cytochrome C family protein; SMART: Tetratricopeptide repeat.
       0.585
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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