STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3557PFAM: oxidoreductase/nitrogenase component 1; KEGG: rpe:RPE_3189 oxidoreductase/nitrogenase, component 1. (454 aa)    
Predicted Functional Partners:
Rvan_3556
Nitrogenase; KEGG: rsq:Rsph17025_0774 nitrogenase; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.
 
 
 0.971
Rvan_3558
PFAM: oxidoreductase/nitrogenase component 1; KEGG: rpt:Rpal_2888 oxidoreductase/nitrogenase component 1.
 
     0.947
nifH-2
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 
 0.889
nifH-3
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 
 0.889
Rvan_3588
Radical SAM domain protein; KEGG: rpa:RPA2634 putative nitrogenase iron-molybdenum cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.879
Rvan_0516
Nitrogenase; KEGG: rpa:RPA1380 nitrogenase vanadium-iron protein, VnfK subunit; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.878
Rvan_3360
KEGG: rpe:RPE_3881 nitrogenase; TIGRFAM: Fe-only nitrogenase, beta subunit; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.878
Rvan_0514
KEGG: rpa:RPA1378 nitrogenase vanadium-iron protein alpha chain; TIGRFAM: nitrogenase vanadium-iron protein, alpha chain; nitrogenase alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.876
Rvan_3362
TIGRFAM: nitrogenase iron-iron protein, alpha chain; nitrogenase alpha chain; nitrogenase component I, alpha chain; KEGG: cts:Ctha_1831 nitrogenase alpha chain; PFAM: oxidoreductase/nitrogenase component 1.
 
  
 0.876
Rvan_3554
PFAM: Radical SAM domain protein; KEGG: rpe:RPE_3191 radical SAM domain-containing protein.
 
     0.861
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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