Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3563PFAM: MotA/TolQ/ExbB proton channel; KEGG: msl:Msil_3137 MotA/TolQ/ExbB proton channel. (246 aa)    
Predicted Functional Partners:
Rvan_3564
Protein TolR; KEGG: bid:Bind_0527 protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.982
Rvan_3605
Protein TolR; KEGG: bid:Bind_0527 protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.924
Rvan_1553
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: protein TolR.
 
 
 0.923
Rvan_3303
Protein TolR; KEGG: mes:Meso_3173 biopolymer transport protein ExbD/TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.923
Rvan_2518
TonB system transport protein ExbD; KEGG: mlo:mll4167 ExbD, uptake of enterochelin; TonB-dependent uptake of B colicins; TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.920
Rvan_3562
TIGRFAM: TonB family protein; KEGG: bid:Bind_0529 TonB family protein.
  
 
 0.832
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.778
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.763
bamA-2
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.717
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.700
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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