STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3573PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet0411 ABC transporter permease protein. (300 aa)    
Predicted Functional Partners:
Rvan_3574
KEGG: met:M446_0056 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.974
Rvan_3572
KEGG: mrd:Mrad2831_5990 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein.
 
  
 0.939
Rvan_3617
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; KEGG: gur:Gura_3874 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein.
 
  
 0.847
Rvan_3585
KEGG: bja:bll6453 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.845
Rvan_3600
KEGG: mno:Mnod_4887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.843
Rvan_3553
KEGG: rsq:Rsph17025_0748 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.821
Rvan_3614
KEGG: sme:SMc02346 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.813
Rvan_2075
KEGG: xau:Xaut_1211 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3.
 
  
 0.784
Rvan_0380
KEGG: ppg:PputGB1_1966 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3.
 
  
 0.772
Rvan_3550
KEGG: bbt:BBta_4844 putative ABC transporter (substrate-binding protein).
 
  
 0.757
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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