STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3582PFAM: Cupin 2 conserved barrel domain protein; KEGG: rpt:Rpal_2588 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Rvan_3581
KEGG: fsu:Fisuc_0156 hypothetical protein.
       0.777
Rvan_3580
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: cno:NT01CX_1210 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
   
   0.735
Rvan_2615
KEGG: rpc:RPC_1247 hypothetical protein.
  
     0.570
Rvan_2498
TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; KEGG: rru:Rru_A3548 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; SMART: Elongator protein 3/MiaB/NifB.
  
     0.498
cobB
PFAM: Silent information regulator protein Sir2; KEGG: rce:RC1_2898 NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
 
    0.481
Rvan_3579
Cysteine synthase; KEGG: cth:Cthe_1842 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; amino acid permease-associated region.
   
 
 0.445
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.438
Rvan_0727
KEGG: bra:BRADO1653 4-vinyl protochlorophyllide reductase; TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase 4VR.
  
     0.433
Rvan_2125
PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rpc:RPC_1245 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like.
  
     0.425
Rvan_3590
PFAM: oxidoreductase/nitrogenase component 1; KEGG: rpt:Rpal_2908 nitrogenase.
  
     0.400
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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