STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3585KEGG: bja:bll6453 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (265 aa)    
Predicted Functional Partners:
Rvan_3584
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msl:Msil_2672 binding-protein-dependent transport systems inner membrane component.
 
  
 0.970
Rvan_1520
TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: azc:AZC_3397 phosphonate C-P lyase system protein PhnK; SMART: AAA ATPase.
    
0.905
Rvan_2885
PFAM: protein of unknown function DUF214; KEGG: hna:Hneap_0780 protein of unknown function DUF214.
 
      0.892
Rvan_1354
Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    0.869
Rvan_3615
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_3875 binding-protein-dependent transport systems inner membrane component.
  
 0.860
Rvan_3583
SMART: extracellular solute-binding protein family 3; KEGG: msl:Msil_2671 NMT1/THI5 like domain protein.
 
  
 0.859
Rvan_3573
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet0411 ABC transporter permease protein.
  
 0.845
Rvan_3599
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3459 binding-protein-dependent transport systems inner membrane component.
  
 0.837
Rvan_3551
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_0750 binding-protein-dependent transport systems inner membrane component.
  
 0.834
Rvan_3552
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_0749 binding-protein-dependent transport systems inner membrane component.
 
  
 0.820
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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