STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3600KEGG: mno:Mnod_4887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (256 aa)    
Predicted Functional Partners:
Rvan_3599
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3459 binding-protein-dependent transport systems inner membrane component.
 
 0.991
Rvan_3551
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_0750 binding-protein-dependent transport systems inner membrane component.
 
 0.973
Rvan_3552
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_0749 binding-protein-dependent transport systems inner membrane component.
 
 
 0.971
Rvan_2074
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_1210 binding-protein-dependent transport systems inner membrane component.
 
 0.965
Rvan_0382
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3161 putative alkanesulfonate transport system permease protein.
 
 0.964
Rvan_3598
KEGG: xau:Xaut_3460 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
  
 
 0.949
Rvan_3617
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; KEGG: gur:Gura_3874 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein.
 
 
 0.941
Rvan_0329
PFAM: NADPH-dependent FMN reductase; KEGG: azl:AZL_b05570 FMN reductase.
  
 
 0.932
Rvan_3550
KEGG: bbt:BBta_4844 putative ABC transporter (substrate-binding protein).
 
 
 0.927
Rvan_2075
KEGG: xau:Xaut_1211 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3.
 
 0.908
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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