STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3602TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: dvu:DVU2271 pyruvate formate-lyase activating enzyme, putative; PFAM: Radical SAM domain protein. (304 aa)    
Predicted Functional Partners:
Rvan_3601
PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dvu:DVU2272 formate acetyltransferase, putative.
  
 0.987
Rvan_3429
PFAM: Aldehyde Dehydrogenase; KEGG: oca:OCAR_6738 succinate-semialdehyde dehydrogenase.
 
  
 0.738
Rvan_1029
PFAM: iron-containing alcohol dehydrogenase; KEGG: rpa:RPA1205 putative alcohol dehydrogenase.
 
  
 0.697
Rvan_1333
Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
  
 0.683
ispDF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
  
  
 0.565
Rvan_0258
PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: mlo:mlr5329 malic enzyme.
  
  
 0.517
Rvan_1566
PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: rce:RC1_0405 malic enzyme.
  
  
 0.517
Rvan_3600
KEGG: mno:Mnod_4887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.458
Rvan_0697
PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: rce:RC1_3164 indolepyruvate ferredoxin oxidoreductase.
     
 0.428
Rvan_3599
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xau:Xaut_3459 binding-protein-dependent transport systems inner membrane component.
       0.418
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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