STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3603KEGG: rpt:Rpal_2590 hypothetical protein. (363 aa)    
Predicted Functional Partners:
Rvan_2399
KEGG: rpc:RPC_3504 hypothetical protein.
   
   0.808
Rvan_0269
KEGG: mgm:Mmc1_2527 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase.
  
 
 0.805
Rvan_1229
KEGG: pha:PSHAa2702 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase.
  
 
 0.805
Rvan_3470
PFAM: Di-haem cytochrome c peroxidase; KEGG: azc:AZC_1340 hypothetical protein.
  
 
 0.805
Rvan_1290
Gluconate 2-dehydrogenase (acceptor); KEGG: mea:Mex_1p5282 putative cytochrome c, putative exported protein; PFAM: cytochrome c class I.
  
 
 0.767
Rvan_1824
Hypothetical protein; KEGG: azo:azo2974 putative cytochrome c550.
  
 
 0.767
Rvan_1825
PFAM: cytochrome c class I; KEGG: azl:AZL_a09940 cytochrome c550.
  
 
 0.767
Rvan_2235
KEGG: sus:Acid_5771 hypothetical protein.
  
 
 0.767
Rvan_2924
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.767
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.753
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.