Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_3603KEGG: rpt:Rpal_2590 hypothetical protein. (363 aa)    
Predicted Functional Partners:
Rvan_1290
Gluconate 2-dehydrogenase (acceptor); KEGG: mea:Mex_1p5282 putative cytochrome c, putative exported protein; PFAM: cytochrome c class I.
  
 
 0.712
Rvan_1824
Hypothetical protein; KEGG: azo:azo2974 putative cytochrome c550.
  
 
 0.712
Rvan_1825
PFAM: cytochrome c class I; KEGG: azl:AZL_a09940 cytochrome c550.
  
 
 0.712
Rvan_2235
KEGG: sus:Acid_5771 hypothetical protein.
  
 
 0.712
Rvan_2924
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.712
Rvan_0363
KEGG: isochorismatase; PFAM: isochorismatase hydrolase.
  
    0.607
Rvan_0269
KEGG: mgm:Mmc1_2527 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase.
  
 
 0.527
Rvan_1229
KEGG: pha:PSHAa2702 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase.
  
 
 0.527
Rvan_3470
PFAM: Di-haem cytochrome c peroxidase; KEGG: azc:AZC_1340 hypothetical protein.
  
 
 0.527
Rvan_3356
Amino acid adenylation domain protein; KEGG: npu:Npun_F3228 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; transferase hexapeptide repeat containing protein.
  
    0.512
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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