STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3616PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gur:Gura_3878 2-hydroxyglutaryl-CoA dehydratase, D-component. (473 aa)    
Predicted Functional Partners:
Rvan_3618
TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: mpl:Mpal_1148 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 
 0.955
Rvan_3613
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gur:Gura_3877 2-hydroxyglutaryl-CoA dehydratase, D-component.
 
     0.903
Rvan_0040
TIGRFAM: benzoyl-CoA reductase, subunit D; CoA-substrate-specific enzyme activase; KEGG: mag:amb2138 D-subunit of benzoyl-CoA reductase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 
 0.805
Rvan_0039
TIGRFAM: benzoyl-CoA reductase, subunit A; CoA-substrate-specific enzyme activase; KEGG: mag:amb2139 2-hydroxyglutaryl-CoA dehydratase activator protein; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 
 0.772
Rvan_3617
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; KEGG: gur:Gura_3874 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein.
       0.760
Rvan_3615
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_3875 binding-protein-dependent transport systems inner membrane component.
 
     0.679
Rvan_3614
KEGG: sme:SMc02346 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.673
Rvan_0037
TIGRFAM: benzoyl-CoA reductase, subunit C; KEGG: mag:amb2141 C-subunit of benzoyl-CoA reductase; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component.
  
     0.632
Rvan_0038
TIGRFAM: benzoyl-CoA reductase, subunit B; KEGG: mag:amb2140 B-subunit of benzoyl-CoA reductase; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component.
  
     0.485
Rvan_2080
KEGG: geo:Geob_1657 hypothetical protein.
  
     0.475
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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