STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_3653TIGRFAM: CitB domain protein; KEGG: rru:Rru_A2987 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Rvan_3652
KEGG: alv:Alvin_1082 precorrin 3B synthase CobZ; TIGRFAM: precorrin 3B synthase CobZ; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 0.994
Rvan_3681
TIGRFAM: NADH-quinone oxidoreductase, E subunit; KEGG: azc:AZC_1671 NADH dehydrogenase; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.
   
 
 0.843
Rvan_1125
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rec:RHECIAT_PB0000268 electron transfer flavoprotein, beta subunit.
   
 
 0.768
Rvan_3504
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mrd:Mrad2831_2960 electron transfer flavoprotein alpha/beta-subunit.
   
 
 0.768
Rvan_0093
TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: mno:Mnod_7244 succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.760
Rvan_3006
KEGG: msl:Msil_1725 fumarate reductase flavoprotein subunit; TIGRFAM: fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 
 0.760
Rvan_2503
PFAM: cysteine-rich small domain; KEGG: rpd:RPD_2921 hypothetical protein.
  
     0.666
Rvan_0697
PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: rce:RC1_3164 indolepyruvate ferredoxin oxidoreductase.
 
  
 0.654
Rvan_0965
PFAM: nickel-dependent hydrogenase large subunit; KEGG: azo:azo3787 ferredoxin hydrogenase, large chain; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
  
 0.646
Rvan_0095
Succinate dehydrogenase, cytochrome b556 subunit; KEGG: mlo:mll4266 succinate dehydrogenase membrane anchor subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit.
   
  
 0.593
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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