STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED91026.1Fe-S cluster assembly ATP-binding protein. (251 aa)    
Predicted Functional Partners:
SED90914.1
Iron-regulated ABC transporter membrane component SufB.
 
 0.999
SED90946.1
Iron-regulated ABC transporter permease protein SufD.
 
 0.999
SED91058.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.996
SED91102.1
Nitrogen fixation protein NifU.
 
  
 0.995
SED91139.1
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.953
SEE89694.1
Selenocysteine lyase/Cysteine desulfurase.
  
 0.934
SED90990.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.804
SED91172.1
Hypothetical protein.
       0.731
SEE72322.1
isopenicillin-N epimerase.
 
  
 0.701
SEE72928.1
Selenocysteine lyase/Cysteine desulfurase.
  
  
 0.656
Your Current Organism:
Haloactinobacterium album
NCBI taxonomy Id: 648782
Other names: Bogoriellaceae bacterium YIM 93306, CCTCC AB 208069, DSM 21368, H. album, Haloactinobacterium album Tang et al. 2010, KCTC 19413, YIM 93306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.