STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE11088.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (229 aa)    
Predicted Functional Partners:
SEE11052.1
Signal transduction histidine kinase.
 
  0.958
SEE75664.1
Hypothetical protein.
 
 0.878
SEE66619.1
Signal transduction histidine kinase.
 
  0.874
SEE72996.1
Signal transduction histidine kinase.
 
  0.874
SED89739.1
Signal transduction histidine kinase.
 
  0.869
SED72630.1
Signal transduction histidine kinase.
 
  0.868
SEE94380.1
Signal transduction histidine kinase.
  
  0.868
SEE96294.1
Signal transduction histidine kinase.
 
  0.865
SED78717.1
Signal transduction histidine kinase.
 
  0.859
SEE74290.1
Two-component system, NarL family, sensor histidine kinase DesK.
 
  0.856
Your Current Organism:
Haloactinobacterium album
NCBI taxonomy Id: 648782
Other names: Bogoriellaceae bacterium YIM 93306, CCTCC AB 208069, DSM 21368, H. album, Haloactinobacterium album Tang et al. 2010, KCTC 19413, YIM 93306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.