STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE27759.1Hyaluronate lyase. (804 aa)    
Predicted Functional Partners:
SEE27807.1
Peptide/nickel transport system substrate-binding protein.
       0.523
SEE30857.1
Acetyltransferase (GNAT) family protein.
  
     0.504
SED94982.1
Cytosine deaminase.
  
     0.487
SEE27720.1
Transcriptional regulator, LacI family.
    
  0.475
SEE32899.1
Heparinase II/III-like protein.
  
  
  0.470
SEE09022.1
Protein of unknown function.
  
     0.468
SEE22093.1
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.439
SEE11407.1
Heparinase II/III-like protein.
  
  
  0.432
SEE99669.1
Hypothetical protein.
  
  
  0.431
SEE27849.1
Peptide/nickel transport system permease protein.
       0.427
Your Current Organism:
Haloactinobacterium album
NCBI taxonomy Id: 648782
Other names: Bogoriellaceae bacterium YIM 93306, CCTCC AB 208069, DSM 21368, H. album, Haloactinobacterium album Tang et al. 2010, KCTC 19413, YIM 93306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.